I Konrad, first, thanks for your input and your time, it is much appreciated.
I understand that those changes are torward the linux kernel, which is used by xen compilation. I applied the changes and i'm rebuilding Qubes with xen 4.6.1 based on a kernel-4.1.24. Will test the build in the next days and post back the results.
output of sudo lspci -v from dom0:
00:00.0 Host bridge: Intel Corporation Mobile 4 Series Chipset Memory Controller Hub (rev 07)
    Subsystem: Lenovo Device 20e0
    Flags: bus master, fast devsel, latency 0
    Capabilities: [e0] Vendor Specific Information: Len=0a <?>
    Kernel driver in use: agpgart-intel
00:02.0 VGA compatible controller: Intel Corporation Mobile 4 Series Chipset Integrated Graphics Controller (rev 07) (prog-if 00 [VGA controller])
    Subsystem: Lenovo Device 20e4
    Flags: bus master, fast devsel, latency 0, IRQ 47
    Memory at e1000000 (64-bit, non-prefetchable) [size=4M]
    Memory at d0000000 (64-bit, prefetchable) [size=256M]
    I/O ports at 3400 [size=8]
    Expansion ROM at <unassigned> [disabled]
    Capabilities: [90] MSI: Enable+ Count=1/1 Maskable- 64bit-
    Capabilities: [d0] Power Management version 3
    Kernel driver in use: i915
    Kernel modules: i915
00:02.1 Display controller: Intel Corporation Mobile 4 Series Chipset Integrated Graphics Controller (rev 07)
    Subsystem: Lenovo Device 20e4
    Flags: fast devsel
    Memory at e1400000 (64-bit, non-prefetchable) [size=1M]
    Capabilities: [d0] Power Management version 3
00:19.0 Ethernet controller: Intel Corporation 82567LF Gigabit Network Connection (rev 03)
    Subsystem: Lenovo Device 20ee
    Flags: bus master, fast devsel, latency 0, IRQ 60
    Memory at e1600000 (32-bit, non-prefetchable) [size=128K]
    Memory at e1624000 (32-bit, non-prefetchable) [size=4K]
    I/O ports at 3000 [size=32]
    Capabilities: [c8] Power Management version 2
    Capabilities: [d0] MSI: Enable+ Count=1/1 Maskable- 64bit+
    Capabilities: [e0] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: e1000e
00:1a.0 USB controller: Intel Corporation 82801I (ICH9 Family) USB UHCI Controller #4 (rev 03) (prog-if 00 [UHCI])
    Subsystem: Lenovo Device 20f0
    Flags: bus master, medium devsel, latency 0, IRQ 16
    I/O ports at 3020 [size=32]
    Capabilities: [50] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: uhci_hcd
00:1a.1 USB controller: Intel Corporation 82801I (ICH9 Family) USB UHCI Controller #5 (rev 03) (prog-if 00 [UHCI])
    Subsystem: Lenovo Device 20f0
    Flags: bus master, medium devsel, latency 0, IRQ 17
    I/O ports at 3040 [size=32]
    Capabilities: [50] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: uhci_hcd
00:1a.2 USB controller: Intel Corporation 82801I (ICH9 Family) USB UHCI Controller #6 (rev 03) (prog-if 00 [UHCI])
    Subsystem: Lenovo Device 20f0
    Flags: bus master, medium devsel, latency 0, IRQ 18
    I/O ports at 3060 [size=32]
    Capabilities: [50] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: uhci_hcd
00:1a.7 USB controller: Intel Corporation 82801I (ICH9 Family) USB2 EHCI Controller #2 (rev 03) (prog-if 20 [EHCI])
    Subsystem: Lenovo Device 20f1
    Flags: bus master, medium devsel, latency 0, IRQ 18
    Memory at e1626000 (32-bit, non-prefetchable) [size=1K]
    Capabilities: [50] Power Management version 2
    Capabilities: [58] Debug port: BAR=1 offset=00a0
    Capabilities: [98] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: ehci_pci
00:1b.0 Audio device: Intel Corporation 82801I (ICH9 Family) HD Audio Controller (rev 03)
    Subsystem: Lenovo Device 20f2
    Flags: bus master, fast devsel, latency 0, IRQ 48
    Memory at e1620000 (64-bit, non-prefetchable) [size=16K]
    Capabilities: [50] Power Management version 2
    Capabilities: [60] MSI: Enable+ Count=1/1 Maskable- 64bit+
    Capabilities: [70] Express Root Complex Integrated Endpoint, MSI 00
    Capabilities: [100] Virtual Channel
    Capabilities: [130] Root Complex Link
    Kernel driver in use: snd_hda_intel
    Kernel modules: snd_hda_intel
00:1c.0 PCI bridge: Intel Corporation 82801I (ICH9 Family) PCI Express Port 1 (rev 03) (prog-if 00 [Normal decode])
    Flags: bus master, fast devsel, latency 0, IRQ 40
    Bus: primary=00, secondary=01, subordinate=01, sec-latency=0
    Capabilities: [40] Express Root Port (Slot-), MSI 00
    Capabilities: [80] MSI: Enable+ Count=1/1 Maskable- 64bit-
    Capabilities: [90] Subsystem: Lenovo Device 20f3
    Capabilities: [a0] Power Management version 2
    Capabilities: [100] Virtual Channel
    Capabilities: [180] Root Complex Link
    Kernel driver in use: pcieport
    Kernel modules: shpchp
00:1c.1 PCI bridge: Intel Corporation 82801I (ICH9 Family) PCI Express Port 2 (rev 03) (prog-if 00 [Normal decode])
    Flags: bus master, fast devsel, latency 0, IRQ 41
    Bus: primary=00, secondary=02, subordinate=02, sec-latency=0
    Memory behind bridge: e1500000-e15fffff
    Capabilities: [40] Express Root Port (Slot-), MSI 00
    Capabilities: [80] MSI: Enable+ Count=1/1 Maskable- 64bit-
    Capabilities: [90] Subsystem: Lenovo Device 20f3
    Capabilities: [a0] Power Management version 2
    Capabilities: [100] Virtual Channel
    Capabilities: [180] Root Complex Link
    Kernel driver in use: pcieport
    Kernel modules: shpchp
00:1c.2 PCI bridge: Intel Corporation 82801I (ICH9 Family) PCI Express Port 3 (rev 03) (prog-if 00 [Normal decode])
    Flags: bus master, fast devsel, latency 0, IRQ 42
    Bus: primary=00, secondary=03, subordinate=03, sec-latency=0
    Capabilities: [40] Express Root Port (Slot-), MSI 00
    Capabilities: [80] MSI: Enable+ Count=1/1 Maskable- 64bit-
    Capabilities: [90] Subsystem: Lenovo Device 20f3
    Capabilities: [a0] Power Management version 2
    Capabilities: [100] Virtual Channel
    Capabilities: [180] Root Complex Link
    Kernel driver in use: pcieport
    Kernel modules: shpchp
00:1c.3 PCI bridge: Intel Corporation 82801I (ICH9 Family) PCI Express Port 4 (rev 03) (prog-if 00 [Normal decode])
    Flags: bus master, fast devsel, latency 0, IRQ 43
    Bus: primary=00, secondary=04, subordinate=04, sec-latency=0
    I/O behind bridge: 00002000-00002fff
    Memory behind bridge: e0800000-e0ffffff
    Prefetchable memory behind bridge: 00000000e0000000-00000000e07fffff
    Capabilities: [40] Express Root Port (Slot-), MSI 00
    Capabilities: [80] MSI: Enable+ Count=1/1 Maskable- 64bit-
    Capabilities: [90] Subsystem: Lenovo Device 20f3
    Capabilities: [a0] Power Management version 2
    Capabilities: [100] Virtual Channel
    Capabilities: [180] Root Complex Link
    Kernel driver in use: pcieport
    Kernel modules: shpchp
00:1d.0 USB controller: Intel Corporation 82801I (ICH9 Family) USB UHCI Controller #1 (rev 03) (prog-if 00 [UHCI])
    Subsystem: Lenovo Device 20f0
    Flags: bus master, medium devsel, latency 0, IRQ 16
    I/O ports at 3080 [size=32]
    Capabilities: [50] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: uhci_hcd
00:1d.1 USB controller: Intel Corporation 82801I (ICH9 Family) USB UHCI Controller #2 (rev 03) (prog-if 00 [UHCI])
    Subsystem: Lenovo Device 20f0
    Flags: bus master, medium devsel, latency 0, IRQ 17
    I/O ports at 30a0 [size=32]
    Capabilities: [50] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: uhci_hcd
00:1d.2 USB controller: Intel Corporation 82801I (ICH9 Family) USB UHCI Controller #3 (rev 03) (prog-if 00 [UHCI])
    Subsystem: Lenovo Device 20f0
    Flags: bus master, medium devsel, latency 0, IRQ 18
    I/O ports at 30c0 [size=32]
    Capabilities: [50] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: uhci_hcd
00:1d.7 USB controller: Intel Corporation 82801I (ICH9 Family) USB2 EHCI Controller #1 (rev 03) (prog-if 20 [EHCI])
    Subsystem: Lenovo Device 20f1
    Flags: bus master, medium devsel, latency 0, IRQ 16
    Memory at e1627000 (32-bit, non-prefetchable) [size=1K]
    Capabilities: [50] Power Management version 2
    Capabilities: [58] Debug port: BAR=1 offset=00a0
    Capabilities: [98] PCI Advanced Features
    Kernel driver in use: pciback
    Kernel modules: ehci_pci
00:1e.0 PCI bridge: Intel Corporation 82801 Mobile PCI Bridge (rev 93) (prog-if 01 [Subtractive decode])
    Flags: fast devsel
    Bus: primary=00, secondary=05, subordinate=05, sec-latency=32
    Capabilities: [50] Subsystem: Lenovo Device 20f4
00:1f.0 ISA bridge: Intel Corporation ICH9M LPC Interface Controller (rev 03)
    Subsystem: Lenovo Device 20f5
    Flags: bus master, medium devsel, latency 0
    Capabilities: [e0] Vendor Specific Information: Len=0c <?>
    Kernel driver in use: lpc_ich
    Kernel modules: lpc_ich
00:1f.2 SATA controller: Intel Corporation 82801IBM/IEM (ICH9M/ICH9M-E) 4 port SATA Controller [AHCI mode] (rev 03) (prog-if 01 [AHCI 1.0])
    Subsystem: Lenovo Device 20f8
    Flags: bus master, 66MHz, medium devsel, latency 0, IRQ 46
    I/O ports at 3408 [size=8]
    I/O ports at 3418 [size=4]
    I/O ports at 3410 [size=8]
    I/O ports at 341c [size=4]
    I/O ports at 30e0 [size=32]
    Memory at e1625000 (32-bit, non-prefetchable) [size=2K]
    Capabilities: [80] MSI: Enable+ Count=1/16 Maskable- 64bit-
    Capabilities: [70] Power Management version 3
    Capabilities: [a8] SATA HBA v1.0
    Capabilities: [b0] PCI Advanced Features
    Kernel driver in use: ahci
00:1f.3 SMBus: Intel Corporation 82801I (ICH9 Family) SMBus Controller (rev 03)
    Subsystem: Lenovo Device 20f9
    Flags: medium devsel, IRQ 18
    Memory at e1628000 (64-bit, non-prefetchable) [size=256]
    I/O ports at 0400 [size=32]
    Kernel modules: i2c_i801
02:00.0 Network controller: Qualcomm Atheros AR9285 Wireless Network Adapter (PCI-Express) (rev 01)
    Subsystem: Foxconn International, Inc. T77H126.00 802.11bgn Wireless Half-size Mini PCIe Card
    Flags: bus master, fast devsel, latency 0, IRQ 17
    Memory at e1500000 (64-bit, non-prefetchable) [size=64K]
    Capabilities: [40] Power Management version 3
    Capabilities: [50] MSI: Enable- Count=1/1 Maskable- 64bit-
    Capabilities: [60] Express Legacy Endpoint, MSI 00
    Capabilities: [100] Advanced Error Reporting
    Capabilities: [140] Virtual Channel
    Capabilities: [160] Device Serial Number 00-15-17-ff-ff-24-14-12
    Capabilities: [170] Power Budgeting <?>
    Kernel driver in use: pciback
    Kernel modules: ath9k